Multiplex genome editing for synthetic biology in Vibrio natriegens.
Dalia TN, Hayes CA, Stolyar S, Marx CJ, McKinlay JB, Dalia AB. Multiplex genome editing for synthetic biology in Vibrio natriegens. ACS Synthetic Biology. 6:1650-1655 (2017). [pdf]
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Partial replacement of soybean meal with Methylobacterium extorquens single-cell protein in feeds for rainbow trout (Oncorhynchus mykiss Walbaum)
Hardy RW, Patro, B, Pujol-Baxley C, Marx CJ, Feinberg L. Partial replacement of soybean meal with Methylobacterium extorquens single-cell protein in feeds for rainbow trout (Oncorhynchus mykiss Walbaum) Aquaculture Research. 49:2218-2224 (2018). [pdf] doi.org/10.1111/are.13678
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A decade of genome sequencing has revolutionized studies of experimental evolution.
Bruger EL, Marx CJ. A decade of genome sequencing has revolutionized studies of experimental evolution. Current Opinion in Microbiology. 45:149-155 (2018). [pdf] doi.org/10.1016/j.mib.2018.03.002
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Bioprinting microbial communities to examine interspecies interactions in time and space.
Hynes WF, Chacón JM, Segrè D, Marx CJ, *Cady NC, *Harcombe WR. Bioprinting microbial communities to examine interspecies interactions in time and space. Biomedical Physics and Engineering Express. 4:055010 (2018). [pdf] doi.org/10.1088/2057-1976/aad544
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Evolution of bi-directional costly mutualism from byproduct consumption.
Harcombe WR, Chacón JM, Adamowicz EM, Chubiz LM, Marx CJ. Evolution of bi-directional costly mutualism from byproduct consumption. PNAS. 115:12000-12004 (2018). [pdf] doi.org/10/1073/pnas.1810949115 [Highlighted article by PNAS: Farrell JM and Brown SP, 2018. Evolution of a bacterial trade in a two-species community. 115:11874-11875. doi.org/10.1073/pnas.1817344115]
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Experimental evolution of Methylobacterium: fifteen years of planned experiments and surprise findings.
Marx CJ. Experimental evolution of Methylobacterium: fifteen years of planned experiments and surprise findings. Current Issues in Molecular Biology. 33:249-266 (2019). [pdf] doi.org/10.21775.cimb.033.249
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Tales from the crypt(ic): neutral mutations can breathe life into adaptation.
Lee JA, Marx CJ. Tales from the crypt(ic): neutral mutations can breathe life into adaptation. Science. 365:318-319 (2019). [pdf] [Perspective] doi.org/10.1126/science.aay2727
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Align to define: ecologically-meaningful populations from genomes.
Stolyar S, Marx CJ. Align to define: ecologically-meaningful populations from genomes. Cell. 178:767-768 (2019). [pdf] [Preview]. doi.org/10.1016/j.cell.2019.07.026
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Microbial phenotypic heterogeneity in response to a metabolic toxin: continuous, dynamically shifting distribution of formaldehyde tolerance in Methylobacterium extorquens populations.
*Lee JA, *Riazi S, Nemati SH, Bazurto JV, Vasdekis AE, Ridenhour BJ, Remien CH, Marx CJ. Microbial phenotypic heterogeneity in response to a metabolic toxin: continuous, dynamically shifting distribution of formaldehyde tolerance in Methylobacterium extorquens populations. PLOS Genetics. 15:e1008458 (2019). [pdf] …
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Cross-feeding of a toxic metabolite in a synthetic lignocellulose-degrading microbial community.
Lee JA, Baugh AC, Shevalier NJ, Strand B, Stolyar S, Marx CJ. Cross-feeding of a toxic metabolite in a synthetic lignocellulose-degrading microbial community. Microorganisms. 9:321 (2021). doi.org/10.3390/microorganisms9020321